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Observatoire spatio-temporel de la biodiversité
et du fonctionnement des socio-écosystèmes
de montagne

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Publications

Soil Temp 2023 - Long term monitoring of near surface soil temperature in the french Alps part of ORCHAMP observatory

Soil Temp ORCHAMP 2021

Ensemble des IDs réalisées sur les gradients altitudinaux ORCHAMP

Leclerc, L., Calderon-Sanou, I., Martinez-Almoyna, C., Paillet, Y., Thuiller, W., Vincenot, L., The Orchamp Consortium, Kunstler, G. (2023) Beyond the role of climate and soil conditions: Living and dead trees matter for soil biodiversity in mountain forests. Soil Biology and Biochemistry, Volume 187, 109194, https://doi.org/10.1016/j.soilbio.2023.109194

Poggiato, G., Gauzere, P., Martinez-Almoyna, C., Deschamps, G., Renaud, J., Violle, C., Munkemuller, T., Thuiller, W. (2023)Predicting combinations of community mean traits using joint modelling. Global Ecology and Biogeography 32(8), DOI:10.1111/geb.13706

Le Guillarme, N., Thuiller, W.(2023) A practical approach to constructing a knowledge graph for soil ecological research. European Journal of Soil Biology, Volume 117, 103497, https://doi.org/10.1016/j.ejsobi.2023.103497

Le Guillarme, N., Hedde, M., Potapov, A.M., Martinez-Munoz, C.A., Berg, M.P., Briones, M.J.I., Calderón-Sanou, I., Degrune, F., Hohberg, K., Martinez-Almoyna, C., Pey, B., Russell, D.J., Thuiller, W. (2023)The Soil Food Web Ontology: Aligning trophic groups, processes, resources, and dietary traits to support food-web research.Ecological Informatics, Volume 78, 102360. https://doi.org/10.1016/j.ecoinf.2023.102360

Calderón-Sanou, I., Ohlmann, M., Munkemuller, T., Zinger, L., Hedde, M., Lionnet, C., Martinez-Almoyna, C., Saillard, A., Renaud, J., Le Guillarme, N., Gielly, L., Thuiller, W. (2023)Mountain soil food webs shaped by the interplay between habitat and pedoclimatic conditions. Authorea. DOI: 10.22541/au.168900135.55709243/v1

Calderon-Sanou, I., Zinger, L., Hedde, M., Martinez-Almoyna, C., Saillard, A., Renaud, J., Gielly, L., Khedim, N., Lionnet, C., Ohlmann, M., The Orchamp Consortium, Münkemüller, T. and Thuiller, W. Energy and physiological tolerance explain multi-trophic soil diversity in temperate mountains. Diversity and Distributions, 28, 2549– 2564 10.1111/ddi.13529. hal-03716655

Hedde, M., Blight, O., Briones, M.J.I., Bonfanti, J., Brauman, A., Brondani, M., Calderón Sanou, I., Clause, J., Conti, E., Cortet, J., Decaëns, T., Erktan, A., Gérard, S., Goulpeau, A., Iannelli, M., Joimel-Boulanger, S., Jouquet, P., Le Guillarme, N., Marsden, C., Martinez Almoyna, C., Mulder, C., Perrin, W., Pétillon, J., Pey, B., Potapov, A.M., Si-moussi, S., Thuiller, W., Trap, J., Zaitsev, A., Vergnes, A., and Capowiez, Y. A common framework for developing robust soil fauna classifications. Geoderma, 426, 116073

Martinez-Almoyna, C., Saillard, A., Zinger, L., Lionnet, C., Arnoldi, C., Foulquier, A., Gielly, L., Piton, G., The Orchamp Consortium, Münkemüller, T. & Thuiller, W. (2022) Differential effects of soil trophic networks on microbial decomposition activity in mountain ecosystems. Soil Biology & Biochemistry, 172, pp.108771. 10.1016/j.soilbio.2022.108771. hal-03750503

Guerrieri, A., Bonin, A., Münkemüller, T., Gielly, L., Thuiller, W., Ficetola, G.F. (2021) Effects of soil preservation for biodiversity monitoring using environmental DNA . Molecular Ecology, 30(13), 3313-3325

Stewart, A., Rioux, D., Boyer, F., Gielly, L., Pompanon, F., Saillard, A., Thuiller, W., The ORCHAMP Consortium, Valay, J.-G., Maréchal, E. & Coissac, E. Altitudinal zonation of green algae biodiversity in the French Alps. Frontiers in Plant Science, 12, DOI: 10.3389/fpls.2021.679428

Weil, S.-S., Martinez-Almoyna, C., Piton, G., Renaud, J., Boulangeat, L., Foulquier, A., Saillard, A., Choler, P., Poulenard, J., ORCHAMP consortium, Münkemüller, T. & Thuiller, W. (2021) Strong links between plant traits and microbial activities but different abiotic drivers in mountain grasslands . Journal of Biogeography, 48(11), 2755-2770

Calderón-Sanou, I., Münkemüller, T., Boyer, F., Zinger, L. & Thuiller, W. From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices? Journal of Biogeography, 47, 193-206

Martinez-Almoyna, C., Piton, G., Abdulhak, S., Boulangeat, L., Choler, P., Delahaye, T., Dentant, C., Foulquier, A., Noble, V., Renaud, J., Rome, M., Saillard, A., The ORCHAMP Consortium, Thuiller, W. & Münkemüller,T. Climate, soil ressources and microbial activity shape the distributions of moutain plants based on their functional traits, Ecography, 43, 1550-1559

Combrisson D., Saillard A. & Thuiller W. 2020. — La prise en compte de la malacofaune continentale comme indicateur des changements globaux, in Léonard L. (éd.), Colloque national de malacologie continentale, Nantes, 6 et 7 décembre 2018. Naturae 2020 (16): 225-230. https://doi.org/10.5852/naturae2020a16

Chalmandrier, L, Pansu, J., Zinger L., Boyer, F., Coissac, E., Génin, A., Gielly, L., Lavergne, S., Schilling, V., Taberlet, P., Münkemüller, T. & Thuiller, W. (2019) Environmental and biotic determinants of soil microbial β-diversity across spatial and phylogenetic scales. Ecography, 42: 2144–2156

Martinez-Almoyna, C., Thuiller, W., Chalmandrier, L., Clément, J.C., Foulquier, A., Ohlmann, M., Zinger, L. & Münkemüller, T. Multi-trophic β-diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions, Functional Ecology 2019;00:1-12. https://doi.org/10.1111/1365‐2435.13393

Ohlmann, M., Mazel, F., Chalmandrier, L., Bec, S., Chave, J., Coissac, E., Gielly, L., Pansu, J., Schilling, V., Taberlet, P., Zinger, L. & Thuiller, W. (2018) Mapping the imprint of biotic interactions on β-diversity, Ecology Letters

Saillard A., Delbart F., Renaud J., Choler P., Thuiller W. (2018) ORCHAMP & the Lautaret master site.
Poster présenté lors de l’inauguration des serres de la Station Alpine Joseph Fourrier

Tardif P., Labonne S., (2018) Observations dans des placettes forestières : réseaux et outils de mesure.
Poster présenté aux 10ème rencontre du réseau Mesure Irstea

Djukic, I., Kepfer-Rojas, S., Kappel Schmidt, I., Steenberg Larsen, K., Beier, C., Berg, B. & Verheyen, K. (2018) Early stage decomposition accross biomes, Science of the total environment, 628-629, 1369-1394

Bonet, R., Arnaud, F., Bodin, X., Bouche, M., Boulangeat, I., Bourdeau, P., Bouvier, M., Cavalli, L., Choler, P., Delestrade, A., Dentant, C., Dumas, D., Fouinat, L., Gardent, M., Lavergne, S., Lavorel, S., Naffrechoux, E., Nellier, Y., Perga, M.-E., Sagot, C., Senn, O. & Thuiller, W. (2016) Indicators of climate: Ecrins National Park participates in long-term monitoring to help determine the effects of climate change. Eco.Mont, 8, 44-52

Thèses

Calderon Sanou, I. (2022) Towards a better understanding of soil multi-trophic biodiversity through the use of environmental DNA metabarcoding. Ecology, environment. Université Grenoble Alpes [2020-..], English. ⟨NNT : 2022GRALV039⟩. ⟨tel-03890224⟩

Khedim, N. (2022) Dynamiques de la matière organique des sols de montagne : analyse de chronoséquences et de climatoséquences. Biodiversité et Ecologie. Université Grenoble Alpes [2020-..], Français. ⟨NNT : 2022GRALV001⟩. ⟨tel-03635129⟩

Martinez Almoyna, C. (2021) Associations plantes-sol le long de gradients environnementaux : des groupes trophiques aux multiples fonctions écosystémiques. Biodiversité. Université Grenoble Alpes [2020-..]. Français. ⟨NNT : 2021GRALV022⟩. ⟨tel-03503503⟩

Ohlmann, M. (2019) Vers une théorie spatiale des réseaux d'interaction en écologie : méthodes, concepts et applications. Biodiversité. Université Grenoble Alpes. Français. ⟨NNT : 2019GREAV065⟩. ⟨tel-03051711⟩